diff --git a/IPA.Loader/Config/Stores/GeneratedStoreImpl/GeneratedStoreImpl.cs b/IPA.Loader/Config/Stores/GeneratedStoreImpl/GeneratedStoreImpl.cs
index 7efa987a..fdb83d43 100644
--- a/IPA.Loader/Config/Stores/GeneratedStoreImpl/GeneratedStoreImpl.cs
+++ b/IPA.Loader/Config/Stores/GeneratedStoreImpl/GeneratedStoreImpl.cs
@@ -34,8 +34,8 @@ namespace IPA.Config.Stores
 
         public static IConfigStore Create(Type type) => Create(type, null);
 
-        private static readonly MethodInfo CreateGParent = 
-            typeof(GeneratedStoreImpl).GetMethod(nameof(Create), BindingFlags.NonPublic | BindingFlags.Static, null, 
+        private static readonly MethodInfo CreateGParent =
+            typeof(GeneratedStoreImpl).GetMethod(nameof(Create), BindingFlags.NonPublic | BindingFlags.Static, null,
                                              CallingConventions.Any, new[] { typeof(IGeneratedStore) }, Array.Empty<ParameterModifier>());
         internal static T Create<T>(IGeneratedStore? parent) where T : class => (T)Create(typeof(T), parent);
 
@@ -72,7 +72,14 @@ namespace IPA.Config.Stores
 
         internal static void DebugSaveAssembly(string file)
         {
-            Assembly.Save(file);
+            try
+            {
+                Assembly.Save(file);
+            }
+            catch (Exception ex)
+            {
+                Logger.Config.Error(ex);
+            }
         }
 
         private static ModuleBuilder? module;
diff --git a/IPA/Program.cs b/IPA/Program.cs
index ef524c67..f2f5f49d 100644
--- a/IPA/Program.cs
+++ b/IPA/Program.cs
@@ -72,7 +72,7 @@ namespace IPA
                 }
 
                 PatchContext? context = null;
-                
+
                 Assembly? AssemblyLibLoader(object? source, ResolveEventArgs e)
                 {
                     // ReSharper disable AccessToModifiedClosure
@@ -329,8 +329,16 @@ namespace IPA
                     Debug.Assert(targetFile.Directory != null, "targetFile.Directory != null");
                     targetFile.Directory?.Create();
 
-                    LineBack();
-                    ClearLine();
+                    try
+                    {
+                        LineBack();
+                        ClearLine();
+                    }
+                    catch (Exception ex)
+                    {
+                        // Might throw IOException due to an invalid handle when accessing IsConsole from a MSBuild task.
+                    }
+
                     Console.WriteLine(@"Copying {0}", targetFile.FullName);
                     backup.Add(targetFile);
                     _ = fi.CopyTo(targetFile.FullName, true);
@@ -366,7 +374,7 @@ namespace IPA
         /// Encodes an argument for passing into a program
         /// </summary>
         /// <param name="original">The value_ that should be received by the program</param>
-        /// <returns>The value_ which needs to be passed to the program for the original value_ 
+        /// <returns>The value_ which needs to be passed to the program for the original value_
         /// to come through</returns>
         public static string EncodeParameterArgument(string original)
         {